Shortcut
CharString
A string of char .
Shortcut for
Functions
| Return a CommandLineOption object extended by an argument text. | |
| Adds an extra line of text below the help text of an option. | |
| Adds a line of text to the help output of the CommandLineParser. | |
| Adds a new section the help output of the CommandLineParser. | |
| Adds a line of text to the title output of the CommandLineParser. | |
| Adds a line of text to the usage output of the CommandLineParser. | |
| Adds a line of text to the version output of the CommandLineParser. | |
| Appends a name to a name store. | |
| Appends a read to a fragment store. | |
| Returns the argument text of a CommandLineOption object. | |
| Extracts the sequence id up to the first whitespace of a sequence file fragment. | |
| Extracts the quality values of a sequence file fragment. | |
| Extracts the quality value id of a sequence file fragment. | |
| Extracts the sequence id of a sequence file fragment. | |
| Reference to the name (identifier) of the database in a Blast report. | |
| Returns an argument set on the command line. | |
| The name (identifier) of the database in a Blast report. | |
| Appends a name to a name store. | |
| The name (identifier) of the query in a Blast report. | |
| Loads contigs into fragment store. | |
| Loads reads into fragment store. | |
| Reference to the name (identifier) of the query in a Blast report. | |
| Sets the help text associated with the CommandLineOption object. | |
| Sets the long-name of a CommandLineOption object. |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de